PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018376m
Common NameCARUB_v10018376mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 365aa    MW: 41138.7 Da    PI: 5.7823
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018376mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.91.4e-37361361101
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      aCaaCk++rr+Ca+dC+lapyfpaeqpk f+nvh+lFG++ ++k+l++l+e+++++am+s+++++ +r r Pv+G++gv ++lq  +  +++el
  Carubv10018376m  36 ACAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILERLDETQKPEAMKSIIFQSYVRDRSPVHGCLGVTQQLQYMIWLAEEEL 129
                      7********************************************************************************************* PP

           DUF260  95 allkeel 101
                      ++++++l
  Carubv10018376m 130 KAVNSQL 136
                      *999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.97335136IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-3436133IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSHVKHIHKG SLERFLDLLL IALFVLMTLK GGTSGACAAC KYQRRRCAAD CPLAPYFPAE  60
QPKLFQNVHR LFGVRSIVKI LERLDETQKP EAMKSIIFQS YVRDRSPVHG CLGVTQQLQY  120
MIWLAEEELK AVNSQLQLYR SQQHQHNGPT QTPHDHHNQM IHDLGLDNKH QEDVTSQLDL  180
GMGLNLNNNQ SNVVAPFFSP LPVSETQQPQ MSYTYSCSEV NNNVYSPPAY NTDSGKEILT  240
NNNNAWGVQN RYDMYNDNNG GGGFSNQNEN VHEMKSNNGV VGIQSQLVNL QMASNHRQQE  300
EEDAHEYDEI HQFLQIIDDR QSFADSKEAY ASSSGETLKE HNIDEIGENE LRSAATCFSL  360
TSVN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292170.10.0hypothetical protein CARUB_v10018376mg
SwissprotQ9STS61e-167LBD27_ARATH; LOB domain-containing protein 27
TrEMBLR0HMD70.0R0HMD7_9BRAS; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_50012750.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63032746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-159LOB domain-containing protein 27